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: Dropoff for blast ungapped extensions in bits (-y) This parameter controls the dropoff at ungapped extension stage. See also the -X parameter. X dropoff value for gapped alignment (in bits) (-X) This is the value that control the path graph region explored by Blast during a gapped extension (Xg in the NAR paper). X dropoff value for final gapped alignment (in bits) (-Z) This parameter controls the dropoff for the final reported alignment. See also the -X parameter. |
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